Additional Materials for 640:338

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  1. notes on difference equations (answers available from problems and solutions page)
  2. another set of notes on difference equations (based on MATLAB, from Dr. David Arnold at Redwoods U)
  3. Maple computation for Wright-Fisher model
  4. lecture notes on population genetics (taken by Mr. Saro Sarkuni, a previous semester)
  5. lecture notes on coverage of shotgun sequencing (Chapter 4) (taken by Mr. Saro Sarkuni, a previous semester)
  6. one-page additional notes on Poisson processes
  7. scan of extra notes on models of nucleotide substitutions (Jukes-Cantor, Kimura), including additional problems (from Allman-Rhodes textbook)
  8. lecture notes on chaps4-6 (taken by Mr. Saro Sarkuni, a previous semester)
  9. lecture notes on restriction enzymes (taken by Mr. Saro Sarkuni, a previous semester)